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    LOC4335924 uncharacterized LOC4335924 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335924, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4335924
    Gene description
    uncharacterized LOC4335924
    Locus tag
    OSNPB_040439300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335924 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22257380..22268298, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (21856885..21867885, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 28-like Neighboring gene uncharacterized LOC4335922 Neighboring gene uncharacterized LOC4335923 Neighboring gene serine/threonine-protein kinase-like protein CCR4 Neighboring gene protein TIC 40, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4335924
    Names
    DDT domain-containing protein DDB_G0282237
    Os04g0439300
    Os04g0439400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22257380..22268298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781184.3 → XP_015636670.1  uncharacterized protein LOC4335924

      UniProtKB/TrEMBL
      B8AU29, Q01K78
      Conserved Domains (4) summary
      pfam02791
      Location:276 → 333
      DDT; DDT domain
      pfam10537
      Location:23 → 118
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:391 → 413
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:501 → 568
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    RNA

    1. XR_010740854.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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