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    LOC4346146 uncharacterized LOC4346146 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346146, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4346146
    Gene description
    uncharacterized LOC4346146
    Locus tag
    OSNPB_080533700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0702C09.3
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    Genomic context

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    See LOC4346146 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26753142..26756211)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26606414..26609538)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene ACT domain-containing protein ACR6 Neighboring gene ACT domain-containing protein ACR6 Neighboring gene uncharacterized LOC136357544 Neighboring gene zinc transporter 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346146
    Names
    Os08g0533700
    P0702E04.41
    cation exchanger-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26753142..26756211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794514.3 → XP_015650000.1  uncharacterized protein LOC4346146 isoform X1

      Conserved Domains (1) summary
      pfam09753
      Location:95 → 342
      Use1; Membrane fusion protein Use1

    2. XM_015794515.3 → XP_015650001.1  uncharacterized protein LOC4346146 isoform X2

      Conserved Domains (1) summary
      pfam09753
      Location:95 → 306
      Use1; Membrane fusion protein Use1

    3. XM_066303499.1 → XP_066159596.1  uncharacterized protein LOC4346146 isoform X3

      UniProtKB/TrEMBL
      B9F573

    4. XM_015794517.2 → XP_015650003.1  uncharacterized protein LOC4346146 isoform X4

      UniProtKB/TrEMBL
      A0A0P0XI78, B9F573, Q6YZC6, Q6YZG7
      Conserved Domains (1) summary
      pfam09753
      Location:5 → 238
      Use1; Membrane fusion protein Use1
    Nucleotide Protein
    Heading Accession and Version

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