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    LOC4337864 pyrophosphate-energized vacuolar membrane proton pump 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337864, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337864
    Gene description
    pyrophosphate-energized vacuolar membrane proton pump 1
    Locus tag
    OSNPB_050156900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Restricted expression toward milk grains (RPKM 49.3) See more
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    Genomic context

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    See LOC4337864 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3353985..3358491, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3335334..3339834, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene dihydrolipoyl dehydrogenase 1, chloroplastic Neighboring gene uncharacterized LOC4337863 Neighboring gene DNA-directed RNA polymerase V subunit 7 Neighboring gene universal stress protein PHOS34

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables diphosphate hydrolysis-driven proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inorganic diphosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyrophosphate-energized vacuolar membrane proton pump 1
    Names
    Os05g0156900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3353985..3358491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782402.3 → XP_015637888.1  pyrophosphate-energized vacuolar membrane proton pump 1

      UniProtKB/TrEMBL
      A0A0N7KK67, A2Y0L3, Q75M03, W8QQX9
      Conserved Domains (1) summary
      PLN02255
      Location:1 → 770
      PLN02255; H(+) -translocating inorganic pyrophosphatase
    Nucleotide Protein
    Heading Accession and Version

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