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    LOC4331620 UPF0496 protein 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331620, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4331620
    Gene description
    UPF0496 protein 3-like
    Locus tag
    OSNPB_030148000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_009069
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    Genomic context

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    See LOC4331620 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2694386..2697120, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2685557..2688291, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene N6-adenosine-methyltransferase non-catalytic subunit MTB Neighboring gene mitochondrial inner membrane protease subunit 2 Neighboring gene uncharacterized LOC107276368 Neighboring gene uncharacterized LOC4331622

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uPF0496 protein 3
    Names
    LOC_Os03g05440
    OSJNBa0067N01.1
    OSJNBb0050N02.3
    UPF0496 protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417195.1 → NP_001404124.1  uPF0496 protein 3

      Status: VALIDATED

      Source sequence(s)
      AK110468, AP014959, CI259690
      UniProtKB/Swiss-Prot
      A0A0P0VT25, A2XCJ1, A3AE47, Q10RR9, Q8H088, Q947Z5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2694386..2697120 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776812.3 → XP_015632298.1  uPF0496 protein 3 isoform X1

      UniProtKB/Swiss-Prot
      A2XCJ1
      Conserved Domains (1) summary
      cl21731
      Location:84 → 371
      DUF677; Protein of unknown function (DUF677)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10RR9.1 GenPept UniProtKB/Swiss-Prot:Q10RR9

    Gene LinkOut

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