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    LOC4333524 leucine-rich repeat extensin-like protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333524, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333524
    Gene description
    leucine-rich repeat extensin-like protein 6
    Locus tag
    OSNPB_030637600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333524 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (25264526..25266110, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (24401381..24402945, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein IQ-DOMAIN 19 Neighboring gene serine/threonine-protein kinase Nek1-like Neighboring gene serine/threonine-protein kinase-like protein CR4 Neighboring gene protein NETWORKED 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat extensin-like protein 6
    Names
    Os03g0637600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      25264526..25266110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773407.3 → XP_015628893.1  leucine-rich repeat extensin-like protein 6

      UniProtKB/TrEMBL
      A0A0P0W0L1, A2XJX3, A3AKP6, Q75J37
      Conserved Domains (2) summary
      PLN00113
      Location:115 → 343
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:115 → 135
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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