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    LOC4338404 probable receptor-like protein kinase At1g80640 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338404, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338404
    Gene description
    probable receptor-like protein kinase At1g80640
    Locus tag
    OSNPB_050319700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338404 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (14920513..14924143)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (14840508..14844127)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene putative mannan endo-1,4-beta-mannosidase 5 Neighboring gene 1-aminocyclopropane-1-carboxylate synthase 4-like Neighboring gene plasma membrane ATPase-like Neighboring gene endo-1,4-beta-xylanase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable receptor-like protein kinase At1g80640
    Names
    Os05g0319700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      14920513..14924143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782856.3 → XP_015638342.1  probable receptor-like protein kinase At1g80640

      UniProtKB/TrEMBL
      A0A0P0WKW5, B8AWL4, Q5W6F7
      Conserved Domains (1) summary
      cd14066
      Location:187 → 454
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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