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    LOC4334653 mannan endo-1,4-beta-mannosidase 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334653, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4334653
    Gene description
    mannan endo-1,4-beta-mannosidase 4-like
    Locus tag
    OSNPB_030828500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MAN4; OsMAN4
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    Genomic context

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    See LOC4334653 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35770200..35773552)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34797438..34800852)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L18, chloroplastic-like Neighboring gene mannan endo-1,4-beta-mannosidase 3-like Neighboring gene cation/H(+) antiporter 19 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mannan endo-1,4-beta-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mannan endo-1,4-beta-mannosidase 4
    Names
    Beta-mannanase 4
    Endo-beta-1,4-mannanase 4
    LOC_Os03g61280
    OSJNBa0010E04.2
    NP_001405905.1
    NP_001405906.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418976.1 → NP_001405905.1  mannan endo-1,4-beta-mannosidase 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK106915, AP014959, CI127512, CI665751
      UniProtKB/TrEMBL
      B8AMQ4

    2. NM_001418977.1 → NP_001405906.1  mannan endo-1,4-beta-mannosidase 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK106915, AP014959, CI127512
      UniProtKB/Swiss-Prot
      A0A0P0W5B7, Q10B67, Q10B68, Q8SAY2
      UniProtKB/TrEMBL
      B8AMQ4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35770200..35773552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10B67.2 GenPept UniProtKB/Swiss-Prot:Q10B67

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