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    LOC4342610 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342610, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342610
    Gene description
    methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
    Locus tag
    OSNPB_070188800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MMSDH1
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    Genomic context

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    See LOC4342610 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4795468..4802171)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4734593..4741434)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein CHUP1, chloroplastic Neighboring gene probable glycosyltransferase At5g03795 Neighboring gene uncharacterized LOC136357289 Neighboring gene uncharacterized LOC136357343

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables malonate-semialdehyde dehydrogenase (acetylating) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in thymine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in valine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
    Names
    OSJNBb0002L09.9
    OSJNBb0084L07.21
    Os07g0188800
    methylmalonate semi-aldehyde dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4795468..4802171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791741.3 → XP_015647227.1  methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

      UniProtKB/TrEMBL
      A0A0P0X3K0, B8B7Y3, Q6Z4E4
      Conserved Domains (1) summary
      cd07085
      Location:41 → 517
      ALDH_F6_MMSDH; Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2
    Nucleotide Protein
    Heading Accession and Version

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