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    LOC4329474 uncharacterized protein At2g33490 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329474, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4329474
    Gene description
    uncharacterized protein At2g33490
    Locus tag
    OSNPB_020515200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 47.0), roots after flowering (RPKM 17.6) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19043446..19049906, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (18575237..18581696, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329472 Neighboring gene uncharacterized LOC112938005 Neighboring gene receptor-like protein 2 Neighboring gene uncharacterized LOC136355259 Neighboring gene GSH-induced LITAF domain protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein At2g33490
    Names
    OSJNBb0071O21.5-1
    OSJNBb0071O21.5-2
    Os02g0515200
    hydroxyproline-rich glycoprotein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19043446..19049906 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772263.3 → XP_015627749.1  uncharacterized protein At2g33490 isoform X3

      UniProtKB/TrEMBL
      A2X5C7
      Conserved Domains (1) summary
      cd07307
      Location:2 → 135
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    2. XM_015772261.3 → XP_015627747.1  uncharacterized protein At2g33490 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VJP9, A2X5C7, Q0E0X0, Q67UP1
      Conserved Domains (1) summary
      cd07307
      Location:43 → 231
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    3. XM_026023561.2 → XP_025879346.1  uncharacterized protein At2g33490 isoform X2

      UniProtKB/TrEMBL
      A2X5C7
      Conserved Domains (2) summary
      cd07307
      Location:1 → 185
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl28033
      Location:307 → 555
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    4. XM_066307920.1 → XP_066164017.1  uncharacterized protein At2g33490 isoform X2

      UniProtKB/TrEMBL
      A2X5C7
    Nucleotide Protein
    Heading Accession and Version

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