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    LOC9271232 heat shock factor-binding protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271232, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9271232
    Gene description
    heat shock factor-binding protein
    Locus tag
    OSNPB_090375100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9271232 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16903038..16907720, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (12545592..12550375, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene enolase 1, chloroplastic Neighboring gene xyloglucan O-acetyltransferase 2 Neighboring gene uncharacterized LOC4346909

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular heat acclimation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat shock factor-binding protein; pentatricopeptide repeat-containing protein At1g52640, mitochondrial
    Names
    Os09g0375100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      16903038..16907720 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020268.2 → XP_025876053.1  heat shock factor-binding protein isoform X1

      Conserved Domains (1) summary
      pfam06825
      Location:11 → 61
      HSBP1; Heat shock factor binding protein 1

    2. XM_015756568.3 → XP_015612054.1  pentatricopeptide repeat-containing protein At1g52640, mitochondrial isoform X2

      Conserved Domains (5) summary
      TIGR00756
      Location:226 → 259
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:226 → 253
      PPR; PPR repeat [structural motif]
      pfam06825
      Location:395 → 443
      HSBP1; Heat shock factor binding protein 1
      pfam12854
      Location:253 → 286
      PPR_1; PPR repeat
      pfam13041
      Location:328 → 377
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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