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    LOC4331042 heparanase-like protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331042, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331042
    Gene description
    heparanase-like protein 3
    Locus tag
    OSNPB_020802200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331042 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34695916..34700198)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34199424..34203705)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355196 Neighboring gene uncharacterized LOC4331041 Neighboring gene uncharacterized LOC136355197 Neighboring gene uncharacterized LOC4331043

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucuronidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plant-type cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heparanase-like protein 3
    Names
    OSJNBa0032L17.36
    Os02g0802200
    P0689B12.13
    putative beta-glucuronidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34695916..34700198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767920.3 → XP_015623406.1  heparanase-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A2XAN8, A3ACD5, Q69II6, Q69SK6
      Conserved Domains (1) summary
      pfam03662
      Location:44 → 353
      Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain

    2. XM_015767921.3 → XP_015623407.1  heparanase-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A2XAN8, A3ACD5, Q69II6, Q69SK6
      Conserved Domains (1) summary
      pfam03662
      Location:44 → 353
      Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain

    3. XM_026022969.2 → XP_025878754.1  heparanase-like protein 3 isoform X2

      UniProtKB/TrEMBL
      A2XAN8
      Conserved Domains (1) summary
      pfam03662
      Location:10 → 268
      Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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