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    LOC4328063 F-box/kelch-repeat protein SKIP4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328063, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4328063
    Gene description
    F-box/kelch-repeat protein SKIP4
    Locus tag
    OSNPB_020114600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1399_H05.37
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    Genomic context

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    See LOC4328063 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (787339..792319, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (780693..785681, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate 2-O-acyltransferase 6 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene small nucleolar RNA Z118/Z121/Z120 Neighboring gene RNA-binding NOB1-like protein Neighboring gene transcription factor MYB8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/kelch-repeat protein SKIP4
    Names
    F-box domain and kelch repeat containing protein FBK2
    Os02g0114600
    P0036E06.16
    putative SKP1 interacting partner

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      787339..792319 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770413.3 → XP_015625899.1  F-box/kelch-repeat protein SKIP4

      UniProtKB/TrEMBL
      A0A0N7KEK1, Q0E4K5, Q6Z7B9, Q6ZH10
      Conserved Domains (4) summary
      PHA03098
      Location:108 → 201
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:147 → 296
      PRK14131; N-acetylneuraminate epimerase
      sd00038
      Location:115 → 159
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:24 → 64
      F-box; F-box domain

    2. XM_015770414.3 → XP_015625900.1  F-box/kelch-repeat protein SKIP4

      UniProtKB/TrEMBL
      A0A0N7KEK1, Q0E4K5, Q6Z7B9, Q6ZH10
      Conserved Domains (4) summary
      PHA03098
      Location:108 → 201
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:147 → 296
      PRK14131; N-acetylneuraminate epimerase
      sd00038
      Location:115 → 159
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:24 → 64
      F-box; F-box domain

    3. XM_015770412.3 → XP_015625898.1  F-box/kelch-repeat protein SKIP4

      UniProtKB/TrEMBL
      A0A0N7KEK1, Q0E4K5, Q6Z7B9, Q6ZH10
      Conserved Domains (4) summary
      PHA03098
      Location:108 → 201
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:147 → 296
      PRK14131; N-acetylneuraminate epimerase
      sd00038
      Location:115 → 159
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:24 → 64
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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