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    LOC4346897 uncharacterized LOC4346897 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346897, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4346897
    Gene description
    uncharacterized LOC4346897
    Locus tag
    OSNPB_090372400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0599F09.6
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    Genomic context

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    See LOC4346897 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16764813..16770629)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (12407391..12413332)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351705 Neighboring gene uncharacterized LOC107278793 Neighboring gene ASC1-like protein 1 Neighboring gene uncharacterized LOC4346899

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346897
    Names
    CD2 antigen cytoplasmic tail-binding protein 2 homolog
    CD2-binding protein-like
    Os09g0372400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      16764813..16770629
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795804.3 → XP_015651290.1  uncharacterized protein LOC4346897 isoform X1

      UniProtKB/TrEMBL
      A3BY74, B7ERU0
      Conserved Domains (1) summary
      cl23757
      Location:356 → 409
      OCRE; OCRE domain

    2. XM_015795802.3 → XP_015651288.1  uncharacterized protein LOC4346897 isoform X2

      UniProtKB/TrEMBL
      A3BY74
      Conserved Domains (1) summary
      cl23757
      Location:353 → 406
      OCRE; OCRE domain

    3. XM_015795803.3 → XP_015651289.1  uncharacterized protein LOC4346897 isoform X3

      UniProtKB/TrEMBL
      A3BY74
      Conserved Domains (2) summary
      cd16074
      Location:347 → 354
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:342 → 395
      OCRE; OCRE domain

    4. XM_066304271.1 → XP_066160368.1  uncharacterized protein LOC4346897 isoform X4

      UniProtKB/TrEMBL
      A3BY74
    Nucleotide Protein
    Heading Accession and Version

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