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    LOC4336787 probable E3 ubiquitin-protein ligase ATL44 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336787, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4336787
    Gene description
    probable E3 ubiquitin-protein ligase ATL44
    Locus tag
    OSNPB_040585000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336787 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30058448..30059412, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29551981..29553125, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336785 Neighboring gene protein MULTIPLE CHLOROPLAST DIVISION SITE 1 Neighboring gene protein S-acyltransferase 21 Neighboring gene Glutamate receptor 3.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ATL44
    Names
    Os04g0585000
    RING-H2 finger protein ATL44
    putative RING-H2 finger protein ATL2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30058448..30059412 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778845.3 → XP_015634331.1  probable E3 ubiquitin-protein ligase ATL44

      UniProtKB/TrEMBL
      Q7XP61
      Conserved Domains (1) summary
      cd16454
      Location:110 → 153
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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