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    LOC4333428 uncharacterized LOC4333428 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333428, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4333428
    Gene description
    uncharacterized LOC4333428
    Locus tag
    OSNPB_030608800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

    See LOC4333428 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (23789745..23796584)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (22930271..22937158)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333426 Neighboring gene protein ALP1-like Neighboring gene uncharacterized LOC4333429 Neighboring gene uncharacterized LOC107278460

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    uncharacterized protein LOC4333428
    Names
    Os03g0608800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      23789745..23796584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777321.3XP_015632807.1  uncharacterized protein LOC4333428 isoform X1

      UniProtKB/TrEMBL
      B8AM75, Q0DQC8, Q10GY6
      Conserved Domains (1) summary
      COG0265
      Location:89372
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
    2. XM_015777323.3XP_015632809.1  uncharacterized protein LOC4333428 isoform X2

      UniProtKB/TrEMBL
      B8AM75
      Conserved Domains (2) summary
      cl00117
      Location:253319
      PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
      cl21584
      Location:89250
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

    RNA

    1. XR_001544804.3 RNA Sequence