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    LOC4349979 probable NAD kinase 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349979, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4349979
    Gene description
    probable NAD kinase 2, chloroplastic
    Locus tag
    OSNPB_110191400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 61.5), leaves after flowering (RPKM 43.9) and 6 other tissues See more
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    Genomic context

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    See LOC4349979 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4625106..4631232)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene probable NAD kinase 2, chloroplastic Neighboring gene DNA topoisomerase 2-binding protein 1-A Neighboring gene uncharacterized LOC4349980 Neighboring gene uncharacterized LOC107279339

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD+ kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NAD metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in NADP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable NAD kinase 2, chloroplastic
    Names
    LOC_Os11g08670
    XP_015616979.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423177.1 → NP_001410106.1  probable NAD kinase 2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK065215, AK101259, CB672817, CI314673, CI339367
      UniProtKB/Swiss-Prot
      Q0IU37, Q53NI2
      UniProtKB/TrEMBL
      B9G9T6

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4625106..4631232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761493.2 → XP_015616979.1  probable NAD kinase 2, chloroplastic

      UniProtKB/Swiss-Prot
      Q53NI2
      Conserved Domains (1) summary
      PLN02727
      Location:5 → 981
      PLN02727; NAD kinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q53NI2.1 GenPept UniProtKB/Swiss-Prot:Q53NI2

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