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    LOC4332692 probable ADP-ribosylation factor GTPase-activating protein AGD14 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332692, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4332692
    Gene description
    probable ADP-ribosylation factor GTPase-activating protein AGD14
    Locus tag
    OSNPB_030323500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 8.9), leaves after flowering (RPKM 8.0) and 6 other tissues See more
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    Genomic context

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    See LOC4332692 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11779664..11785049)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11724978..11730944)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein 17-like Neighboring gene magnesium-chelatase subunit ChlH, chloroplastic-like Neighboring gene chaperone protein dnaJ 20, chloroplastic Neighboring gene mitochondrial import receptor subunit TOM40-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ADP-ribosylation factor GTPase-activating protein AGD14
    Names
    Os03g0323500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11779664..11785049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776933.3 → XP_015632419.1  probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X3

      UniProtKB/TrEMBL
      A0A8J8YM22, A3AHG8, Q10M48
      Conserved Domains (2) summary
      PLN03131
      Location:6 → 631
      PLN03131; hypothetical protein; Provisional
      pfam01412
      Location:14 → 125
      ArfGap; Putative GTPase activating protein for Arf

    2. XM_015776931.3 → XP_015632417.1  probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YM22, A3AHG8, Q10M48
      Conserved Domains (1) summary
      PLN03131
      Location:6 → 647
      PLN03131; hypothetical protein; Provisional

    3. XM_066308447.1 → XP_066164544.1  probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X4

      UniProtKB/TrEMBL
      A0A8J8YM22, A3AHG8, Q10M48

    4. XM_015776932.3 → XP_015632418.1  probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2

      UniProtKB/TrEMBL
      A0A8J8YM22, A3AHG8, Q10M48
      Conserved Domains (1) summary
      PLN03131
      Location:6 → 646
      PLN03131; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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