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    LOC4331151 telomere-binding protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331151, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331151
    Gene description
    telomere-binding protein 1-like
    Locus tag
    OSNPB_020817800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TBP1; OJ1202_E07.1-1; OJ1202_E07.1-2; OJ1136_C12.18-1; OJ1136_C12.18-2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.6), leaves before flowering (RPKM 16.0) and 6 other tissues See more
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    Genomic context

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    See LOC4331151 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35584318..35589345, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35086083..35090706, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA10-like Neighboring gene 3-ketoacyl-CoA thiolase 2, peroxisomal Neighboring gene uncharacterized LOC136355148 Neighboring gene uncharacterized LOC4331153 Neighboring gene protein LUTEIN DEFICIENT 5, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomere-binding protein 1
    Names
    LOC_Os02g57270
    Protein RTBP1
    putative telomere binding protein-1; TBP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417093.1 → NP_001404022.1  telomere-binding protein 1

      Status: VALIDATED

      Source sequence(s)
      AK100685, AP014958, CB646485, CB652599, CI519256, CI599775
      UniProtKB/Swiss-Prot
      Q6K9S3, Q6K9S4, Q9LL45
      UniProtKB/TrEMBL
      A2XB20

    RNA

    1. NR_184422.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK100685, CB646485, CI519256, CI599775

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35584318..35589345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307059.1 → XP_066163156.1  telomere-binding protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6K9S3, Q6K9S4, Q9LL45
      UniProtKB/TrEMBL
      A2XB20
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LL45.2 GenPept UniProtKB/Swiss-Prot:Q9LL45

    Gene LinkOut

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