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    LOC4344365 uncharacterized LOC4344365 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344365, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4344365
    Gene description
    uncharacterized LOC4344365
    Locus tag
    OSNPB_070690300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 25.6), roots before flowering (RPKM 23.6) and 6 other tissues See more
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    Genomic context

    See LOC4344365 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29587122..29591145, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29353060..29357312, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene BRCT domain-containing protein At4g02110-like Neighboring gene uncharacterized LOC4344364 Neighboring gene probable protein phosphatase 2C 33 Neighboring gene uncharacterized LOC107281799 Neighboring gene uncharacterized LOC107277841 Neighboring gene COBRA-like protein 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4344365
    Names
    Os07g0690300
    P0597G07.119-1
    PHD-finger family protein
    nucleolin-related protein NRP-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29587122..29591145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791797.3XP_015647283.1  uncharacterized protein LOC4344365

      UniProtKB/TrEMBL
      B9FV00
      Conserved Domains (2) summary
      cd00162
      Location:368414
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cl22851
      Location:461505
      PHD_SF; PHD finger superfamily