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    LOC4343764 zinc finger protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343764, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343764
    Gene description
    zinc finger protein 1
    Locus tag
    OSNPB_070588600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24197708..24198854)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23973325..23974411)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription factor RSL3 Neighboring gene mitotic checkpoint protein BUB3.2 Neighboring gene zinc finger protein AZF3 Neighboring gene uncharacterized LOC4343766

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 1
    Names
    OSJNBb0005G07.119
    Os07g0588600
    putative zinc finger transcription factor ZFP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24197708..24198854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791723.3 → XP_015647209.1  zinc finger protein 1

      UniProtKB/TrEMBL
      A0A0N7KNS3, A2YN72, Q0D515, Q7EZ27
      Conserved Domains (2) summary
      sd00017
      Location:89 → 109
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13912
      Location:87 → 111
      zf-C2H2_6; C2H2-type zinc finger
    Nucleotide Protein
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