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    LOC4345578 RNA-binding motif protein 25 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345578, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345578
    Gene description
    RNA-binding motif protein 25
    Locus tag
    OSNPB_080416400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 35.9), leaves after flowering (RPKM 27.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20049975..20055611, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19913095..19919102, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 29-like Neighboring gene uncharacterized LOC9270840 Neighboring gene uncharacterized LOC107282061 Neighboring gene uncharacterized LOC4345580 Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding motif protein 25
    Names
    Os08g0416400
    P0433E10.19
    RNA-binding protein 25
    putative RNA-binding region RNP-1 and Splicing factor PWI family member protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      20049975..20055611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794561.3 → XP_015650047.1  RNA-binding motif protein 25 isoform X1

      UniProtKB/TrEMBL
      B9G0X0, Q6ZA70
      Conserved Domains (4) summary
      smart00311
      Location:835 → 908
      PWI; PWI, domain in splicing factors
      COG0724
      Location:210 → 339
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12446
      Location:216 → 299
      RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
      cl23807
      Location:105 → 160
      WWbp; WW-domain ligand protein

    2. XM_066303590.1 → XP_066159687.1  RNA-binding motif protein 25 isoform X2

      UniProtKB/TrEMBL
      B9G0X0

    3. XM_066303591.1 → XP_066159688.1  RNA-binding motif protein 25 isoform X4

      UniProtKB/TrEMBL
      B9G0X0

    4. XM_015794565.3 → XP_015650051.1  RNA-binding motif protein 25 isoform X3

      UniProtKB/TrEMBL
      B9G0X0
      Conserved Domains (2) summary
      smart00311
      Location:686 → 759
      PWI; PWI, domain in splicing factors
      cd12446
      Location:67 → 150
      RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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