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    LOC4347672 protein STAY-GREEN, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347672, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4347672
    Gene description
    protein STAY-GREEN, chloroplastic-like
    Locus tag
    OSNPB_090532000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SGR; P0515E01.8; OJ1254_E07.23
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    Genomic context

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    See LOC4347672 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25310725..25313116, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20868717..20871234, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene polygalacturonate 4-alpha-galacturonosyltransferase-like Neighboring gene polygalacturonate 4-alpha-galacturonosyltransferase Neighboring gene NDR1/HIN1-like protein 26 Neighboring gene two-component response regulator-like PRR95

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The senescence-induced staygreen protein regulates chlorophyll degradation. Park SY, et al. Plant Cell, 2007 May. PMID 17513504, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein STAY-GREEN, chloroplastic
    Names
    LOC_Os09g36200
    Protein STAYGREEN
    senescence-inducible chloroplast stay-green protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422918.1 → NP_001409847.1  protein STAY-GREEN, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AY850134, CI275672, CI660343, CI664251
      UniProtKB/Swiss-Prot
      A0A0P0XPI7, A3C0X0, Q652K1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      25310725..25313116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q652K1.1 GenPept UniProtKB/Swiss-Prot:Q652K1

    Gene LinkOut

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