U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC9268758 soluble starch synthase 3a, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268758, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9268758
    Gene description
    soluble starch synthase 3a, chloroplastic/amyloplastic-like
    Locus tag
    OSNPB_080191433
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FLO5; SS3A; dull1; SSIIIA; SSIII-2; OsSSIIIa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9268758 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5400785..5413672)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5349928..5363361)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene phosphoribosylamine--glycine ligase Neighboring gene putative F-box/LRR-repeat protein 23 Neighboring gene autophagy-related protein 8C-like Neighboring gene uncharacterized LOC136351338

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    soluble starch synthase 3a, chloroplastic/amyloplastic
    Names
    LOC_Os08g09230
    OSJNBa0056O06.4-1
    Protein FLOURY ENDOSPERM 5
    Soluble starch synthase 3a, chloroplastic/amyloplastic
    Soluble starch synthase IIIa
    putative starch synthase DULL1
    soluble starch synthase III-2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      5400785..5413672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795182.3 → XP_015650668.1  soluble starch synthase 3a, chloroplastic/amyloplastic

      UniProtKB/TrEMBL
      B9FZG2
      Conserved Domains (1) summary
      PLN02316
      Location:875 → 1787
      PLN02316; synthase/transferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0P0XCU3.2 GenPept UniProtKB/Swiss-Prot:A0A0P0XCU3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials