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    LOC4329451 protein SICKLE [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329451, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329451
    Gene description
    protein SICKLE
    Locus tag
    OSNPB_020510300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4329451 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (18700663..18703272, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (18239223..18241855, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene U6 snRNA-associated Sm-like protein LSm6 Neighboring gene acetolactate synthase 1, chloroplastic-like Neighboring gene uncharacterized LOC107278280 Neighboring gene heavy metal-associated isoprenylated plant protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of phosphatidate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SICKLE
    Names
    OSJNBa0001A11.1
    OSJNBa0052M16.39
    Os02g0510300
    basic salivary proline-rich protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      18700663..18703272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767631.3 → XP_015623117.1  protein SICKLE

      UniProtKB/TrEMBL
      Q6K2E7, Q6K795
      Conserved Domains (1) summary
      pfam14967
      Location:107 → 196
      FAM70; FAM70 protein
    Nucleotide Protein
    Heading Accession and Version

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