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    LOC4334873 probable aquaporin PIP2-8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334873, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334873
    Gene description
    probable aquaporin PIP2-8
    Locus tag
    OSNPB_030861300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIP2-8; OsPIP2;8
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    Genomic context

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    See LOC4334873 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37339641..37340739)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36360327..36361759)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcriptional corepressor LEUNIG_HOMOLOG Neighboring gene uncharacterized LOC4334870 Neighboring gene COP1-interacting protein 7 Neighboring gene heavy metal-associated isoprenylated plant protein 9 Neighboring gene rhodanese-like domain-containing protein 8, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables water channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aquaporin PIP2-8
    Names
    LOC_Os03g64330
    OSJNBa0033P04.25
    Plasma membrane intrinsic protein 2-8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423917.1 → NP_001410846.1  probable aquaporin PIP2-8

      Status: VALIDATED

      Source sequence(s)
      AK109024
      UniProtKB/Swiss-Prot
      B7F1U1, Q10A90, Q7Y1E6
      UniProtKB/TrEMBL
      A2XPC6, B9F810

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37339641..37340739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7Y1E6.1 GenPept UniProtKB/Swiss-Prot:Q7Y1E6

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