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    LOC4345387 phosphoenolpyruvate carboxylase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345387, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345387
    Gene description
    phosphoenolpyruvate carboxylase 2
    Locus tag
    OSNPB_080366000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1484_G09.129-1
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    Genomic context

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    See LOC4345387 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (17093803..17099531, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (16964826..16970572, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene wall-associated receptor kinase 1 Neighboring gene rRNA (cytosine-C(5))-methyltransferase NOP2C Neighboring gene multiprotein-bridging factor 1a Neighboring gene protein ELF4-LIKE 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoenolpyruvate carboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbon fixation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoenolpyruvate carboxylase 2
    Names
    Os08g0366000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      17093803..17099531 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794581.2 → XP_015650067.1  phosphoenolpyruvate carboxylase 2

      UniProtKB/TrEMBL
      A0A0N7KPR3, A2YUJ2, Q0J655, Q84XH0, Q8H4V1
      Conserved Domains (1) summary
      pfam00311
      Location:162 → 964
      PEPcase; Phosphoenolpyruvate carboxylase
    Nucleotide Protein
    Heading Accession and Version

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