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    LOC4345351 uncharacterized LOC4345351 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345351, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345351
    Gene description
    uncharacterized LOC4345351
    Locus tag
    OSNPB_080351300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves after flowering (RPKM 368.0), roots after flowering (RPKM 293.2) and 1 other tissue See more
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    Genomic context

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    See LOC4345351 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (16057926..16068590, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15981331..15991678, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345349 Neighboring gene uncharacterized LOC4345350 Neighboring gene uncharacterized LOC107278074 Neighboring gene uncharacterized LOC4345352

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345351

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      16057926..16068590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303622.1 → XP_066159719.1  uncharacterized protein LOC4345351 isoform X2

    2. XM_066303621.1 → XP_066159718.1  uncharacterized protein LOC4345351 isoform X1

    3. XM_066303620.1 → XP_066159717.1  uncharacterized protein LOC4345351 isoform X1

    4. XM_015795280.3 → XP_015650766.1  uncharacterized protein LOC4345351 isoform X1

    RNA

    1. XR_001548416.3 RNA Sequence

    2. XR_001548414.3 RNA Sequence

    3. XR_010734608.1 RNA Sequence

    4. XR_010734611.1 RNA Sequence

    5. XR_010734609.1 RNA Sequence

    6. XR_010734610.1 RNA Sequence

    7. XR_001548420.3 RNA Sequence

    8. XR_010734615.1 RNA Sequence

    9. XR_010734614.1 RNA Sequence

    10. XR_001548418.3 RNA Sequence

    11. XR_010734617.1 RNA Sequence

    12. XR_010734613.1 RNA Sequence

    13. XR_010734616.1 RNA Sequence

    14. XR_010734612.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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