LOC4337672 E3 SUMO-protein ligase SIZ1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4337672
Gene description: E3 SUMO-protein ligase SIZ1-like
Locus tag: OSNPB_050125000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: SIZ1
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Genomic context

Location:: chromosome: 5

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	5	NC_089039.1 (1439778..1451372)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (1426914..1438525)

Chromosome 5 - NC_089039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

OsSIZ1 may act as a regulator of the phosphate (Nitrogen)-dependent responses in rice.
Title: OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.
OsSIZ1 and OsSIZ2 are localized to the nucleus and function as SUMO E3-ligases.
Title: Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice.
The structure of the SAP domain (residues 2-105) of rice Siz1 (Os05g0125000) is a four-helix bundle with an up-down-extended loop-down-up topology.
Title: Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: E3 SUMO-protein ligase SIZ1

Names: E3 SUMO-protein transferase SIZ1; LOC_Os05g03430; OSJNBb0079L11.3

NP_001407000.1

EC 2.3.2.-

EC 6.3.2.-

NP_001407001.1

EC 2.3.2.-

EC 6.3.2.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420071.1 → NP_001407000.1 E3 SUMO-protein ligase SIZ1 isoform 1

Status: VALIDATED

Source sequence(s)

AK105290, AU172477, CB650706, CI271186

UniProtKB/TrEMBL

B9FM90
NM_001420072.1 → NP_001407001.1 E3 SUMO-protein ligase SIZ1 isoform 2

Status: VALIDATED

Source sequence(s)

AK105290, AU172477, CI271186

UniProtKB/Swiss-Prot

A0A0P0WHD5, Q6L4L4

UniProtKB/TrEMBL

B9FM90