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    LOC9270471 oxysterol-binding protein-related protein 1C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270471, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9270471
    Gene description
    oxysterol-binding protein-related protein 1C
    Locus tag
    OSNPB_030704700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9270471 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29203671..29212938)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28329940..28339176)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase ASHR1 Neighboring gene serine/threonine-protein kinase MPS1 Neighboring gene ARF guanine-nucleotide exchange factor GNL2-like Neighboring gene uncharacterized LOC112938169

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxysterol-binding protein-related protein 1C
    Names
    Os03g0704700
    putative oxysterol-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29203671..29212938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776468.3 → XP_015631954.1  oxysterol-binding protein-related protein 1C isoform X1

      UniProtKB/TrEMBL
      A2XL56
      Conserved Domains (3) summary
      cd13294
      Location:89 → 227
      PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
      pfam00169
      Location:89 → 221
      PH; PH domain
      pfam01237
      Location:431 → 783
      Oxysterol_BP; Oxysterol-binding protein

    2. XM_015776469.2 → XP_015631955.1  oxysterol-binding protein-related protein 1C isoform X2

      UniProtKB/TrEMBL
      A2XL56, Q8LN57
      Conserved Domains (2) summary
      cd13294
      Location:89 → 227
      PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
      pfam01237
      Location:427 → 779
      Oxysterol_BP; Oxysterol-binding protein

    3. XM_015776470.3 → XP_015631956.1  oxysterol-binding protein-related protein 1C isoform X3

      Conserved Domains (1) summary
      pfam01237
      Location:99 → 451
      Oxysterol_BP; Oxysterol-binding protein

    4. XM_066308648.1 → XP_066164745.1  oxysterol-binding protein-related protein 1C isoform X4

      UniProtKB/TrEMBL
      C7J060, Q10E85
    Nucleotide Protein
    Heading Accession and Version

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