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    LOC4339007 kinesin-like protein KIN-10C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339007, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339007
    Gene description
    kinesin-like protein KIN-10C
    Locus tag
    OSNPB_050459400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    KIN10C; OsJ_18806; OJ1281_H05.2
    Expression
    Broad expression in flower buds (RPKM 6.3), mature seeds (RPKM 2.3) and 6 other tissues See more
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    Genomic context

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    See LOC4339007 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22687571..22691211)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22573848..22577694)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB3R-2-like Neighboring gene uncharacterized LOC4339006 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene protein ESMERALDA 1 Neighboring gene uncharacterized LOC136356550

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule-based movement IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of microtubule associated complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kinesin-like protein KIN-10C
    Names
    LOC_Os05g38480
    Os05g0459400
    kinesin-like protein KIF22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420526.1 → NP_001407455.1  kinesin-like protein KIN-10C

      Status: VALIDATED

      Source sequence(s)
      AK073413, AK104040, AP014961, CI222255, CI609155, CI675712, EG709919
      UniProtKB/Swiss-Prot
      Q6L512
      UniProtKB/TrEMBL
      B8AYZ9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22687571..22691211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6L512.1 GenPept UniProtKB/Swiss-Prot:Q6L512

    Gene LinkOut

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    Research Materials