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    LOC4323841 pentatricopeptide repeat-containing protein At3g48250, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323841, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323841
    Gene description
    pentatricopeptide repeat-containing protein At3g48250, chloroplastic
    Locus tag
    OSNPB_010970900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0518C01.7
    Expression
    Ubiquitous expression in flower buds (RPKM 13.2), flowers (RPKM 9.2) and 6 other tissues See more
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    Genomic context

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    See LOC4323841 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43490235..43495258, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42837582..42842620, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene plastoglobule-localized metallopeptidase 48, chloroplastic Neighboring gene protein MAIN-LIKE 2-like Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 5-like Neighboring gene uncharacterized LOC4323844

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g48250, chloroplastic
    Names
    Os01g0970900
    pentatricopeptide (PPR) repeat-containing protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43490235..43495258 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785177.3 → XP_015640663.1  pentatricopeptide repeat-containing protein At3g48250, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KEH4, A2WZJ7, Q0JFN4, Q94DI0
      Conserved Domains (4) summary
      PLN03218
      Location:316 → 515
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:208 → 242
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:349 → 378
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:347 → 395
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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