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    LOC4328654 SPX domain-containing protein 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328654, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4328654
    Gene description
    SPX domain-containing protein 2-like
    Locus tag
    OSNPB_020202200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SPX2; OsSPX2; OsJ_05799
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    Genomic context

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    See LOC4328654 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5717325..5719809)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5706529..5709120)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355436 Neighboring gene calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 3 Neighboring gene ethylene-responsive transcription factor WIN1 Neighboring gene DEAD-box ATP-dependent RNA helicase 41-like Neighboring gene nuclear pore complex protein NUP205 Neighboring gene adenine nucleotide transporter BT1, chloroplastic/amyloplastic/mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cellular response to phosphate starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sPX domain-containing protein 2
    Names
    LOC_Os02g10780
    P0419A09.34
    Protein SPX DOMAIN GENE 2
    SPX domain-containing protein 2
    putative SPX (SYG1/Pho81/XPR1) domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409393.1 → NP_001396322.1  sPX domain-containing protein 2

      Status: VALIDATED

      Source sequence(s)
      AK107245, CI111006, CI166080
      UniProtKB/Swiss-Prot
      A0A0P0VG28, A2X254, A3A498, Q6Z784

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5717325..5719809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z784.1 GenPept UniProtKB/Swiss-Prot:Q6Z784

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