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    LOC4339952 uncharacterized LOC4339952 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339952, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339952
    Gene description
    uncharacterized LOC4339952
    Locus tag
    OSNPB_060122200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0542E10.7
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    Genomic context

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    See LOC4339952 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1328980..1331645)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1172241..1175236)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276065 Neighboring gene aspartyl protease family protein At5g10770 Neighboring gene uncharacterized LOC107276359 Neighboring gene uncharacterized LOC136356891 Neighboring gene uncharacterized LOC9270251

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339952
    Names
    Os06g0122200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1328980..1331645
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787314.3 → XP_015642800.1  uncharacterized protein LOC4339952

      UniProtKB/TrEMBL
      A2Y8P7, A3B7W5, Q5VQD3
      Conserved Domains (2) summary
      pfam04578
      Location:733 → 790
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:443 → 527
      DUF4220; Domain of unknown function (DUF4220)
    Nucleotide Protein
    Heading Accession and Version

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