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    LOC4326883 putative pectate lyase 21 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326883, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326883
    Gene description
    putative pectate lyase 21
    Locus tag
    OSNPB_010546800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326883 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (20887695..20889221, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (20317863..20319607, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g38150 Neighboring gene pentatricopeptide repeat-containing protein At5g40400 Neighboring gene arginine-specific demethylase JMJ20 Neighboring gene disease resistance protein RPM1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectate lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pectate lyase 21
    Names
    OSJNBa0026J14.21
    Os01g0546800
    putative allergen Amb a I.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      20887695..20889221 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763401.3 → XP_015618887.1  putative pectate lyase 21

      UniProtKB/TrEMBL
      A0A0P0V431, A2WR67, Q0JM30, Q8RYR4
      Conserved Domains (1) summary
      smart00656
      Location:112 → 278
      Amb_all; Amb_all domain
    Nucleotide Protein
    Heading Accession and Version

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