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    LOC4341851 probable beta-1,3-galactosyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341851, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4341851
    Gene description
    probable beta-1,3-galactosyltransferase 2
    Locus tag
    OSNPB_060679500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341851 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29142363..29146105)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28275643..28279475)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA snoR97 Neighboring gene transcription factor MYB123 Neighboring gene uncharacterized LOC107278639 Neighboring gene uncharacterized LOC4341852

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable beta-1,3-galactosyltransferase 2
    Names
    Os06g0679500
    P0003H08.14-1
    P0003H08.14-2
    putative Avr9 elicitor response protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29142363..29146105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311936.1 → XP_066168033.1  probable beta-1,3-galactosyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      B8B1G4

    2. XM_015786107.2 → XP_015641593.1  probable beta-1,3-galactosyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      B8B1G4, B9FQI0, Q0DA40, Q655N8
      Conserved Domains (1) summary
      PLN03193
      Location:1 → 395
      PLN03193; beta-1,3-galactosyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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