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    LOC4339741 zinc finger BED domain-containing protein RICESLEEPER 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339741, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4339741
    Gene description
    zinc finger BED domain-containing protein RICESLEEPER 3-like
    Locus tag
    OSNPB_050583200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339741 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29214346..29218255)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29028867..29032786)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene uncharacterized LOC107278707 Neighboring gene mitochondrial import receptor subunit TOM7-1 Neighboring gene probable GPI-anchored adhesin-like protein PGA55

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger BED domain-containing protein RICESLEEPER 3
    Names
    LOC_Os05g50640
    OSJNBb0035N21.10
    Transposase-like protein RICESLEEPER 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420917.1 → NP_001407846.1  zinc finger BED domain-containing protein RICESLEEPER 3

      Status: VALIDATED

      Source sequence(s)
      AK102230, AP014961
      UniProtKB/Swiss-Prot
      A0A0P0WRF7, Q75HY5
      UniProtKB/TrEMBL
      B9FLT5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29214346..29218255
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782247.3 → XP_015637733.1  zinc finger BED domain-containing protein RICESLEEPER 3 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WRF7, Q75HY5
      UniProtKB/TrEMBL
      B9FLT5
      Conserved Domains (3) summary
      smart00614
      Location:110 → 162
      ZnF_BED; BED zinc finger
      pfam05699
      Location:647 → 733
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14372
      Location:506 → 601
      DUF4413; Domain of unknown function (DUF4413)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75HY5.1 GenPept UniProtKB/Swiss-Prot:Q75HY5

    Gene LinkOut

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    Research Materials