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    LOC4349303 translocase of chloroplast 132, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349303, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349303
    Gene description
    translocase of chloroplast 132, chloroplastic
    Locus tag
    OSNPB_100548800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349303 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22165934..22169574, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21473567..21477275, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene expansin-B9-like Neighboring gene U-box domain-containing protein 33 Neighboring gene U-box domain-containing protein 36 Neighboring gene UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocase of chloroplast 132, chloroplastic
    Names
    Os10g0548800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22165934..22169574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758559.3 → XP_015614045.1  translocase of chloroplast 132, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XWW4, A2Z9Z4, Q0IVX1, Q7XCG5, Q94LU7
      Conserved Domains (2) summary
      PHA03307
      Location:183 → 298
      PHA03307; transcriptional regulator ICP4; Provisional
      TIGR00993
      Location:262 → 1004
      3a0901s04IAP86; chloroplast protein import component Toc86/159, G and M domains
    Nucleotide Protein
    Heading Accession and Version

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