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    LOC4338323 phosphatidate cytidylyltransferase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338323, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338323
    Gene description
    phosphatidate cytidylyltransferase, mitochondrial
    Locus tag
    OSNPB_050295700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338323 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (13156126..13160476, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13090381..13092956, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270759 Neighboring gene acetyl-CoA carboxylase 2-like Neighboring gene lactoylglutathione lyase Neighboring gene uncharacterized LOC4338325

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidate cytidylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CDP-diacylglycerol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cardiolipin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidate cytidylyltransferase, mitochondrial; uncharacterized protein LOC4338323
    Names
    Os05g0295700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      13156126..13160476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310452.1 → XP_066166549.1  uncharacterized protein LOC4338323 isoform X1

    2. XM_066310454.1 → XP_066166551.1  uncharacterized protein LOC4338323 isoform X1

    3. XM_066310451.1 → XP_066166548.1  uncharacterized protein LOC4338323 isoform X1

    4. XM_066310453.1 → XP_066166550.1  uncharacterized protein LOC4338323 isoform X1

    5. XM_066310455.1 → XP_066166552.1  uncharacterized protein LOC4338323 isoform X1

    6. XM_066310469.1 → XP_066166566.1  phosphatidate cytidylyltransferase, mitochondrial isoform X6

    7. XM_026025433.2 → XP_025881218.1  phosphatidate cytidylyltransferase, mitochondrial isoform X6

      Conserved Domains (1) summary
      pfam09139
      Location:9 → 84
      Mmp37; Mitochondrial matrix Mmp37

    8. XM_066310470.1 → XP_066166567.1  phosphatidate cytidylyltransferase, mitochondrial isoform X6

    9. XM_015785109.3 → XP_015640595.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

      Conserved Domains (1) summary
      pfam09139
      Location:9 → 111
      Mmp37; Mitochondrial matrix Mmp37

    10. XM_066310458.1 → XP_066166555.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

    11. XM_026025432.2 → XP_025881217.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

      Conserved Domains (1) summary
      pfam09139
      Location:9 → 111
      Mmp37; Mitochondrial matrix Mmp37

    12. XM_015785111.3 → XP_015640597.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

      Conserved Domains (1) summary
      pfam09139
      Location:9 → 108
      Mmp37; Mitochondrial matrix Mmp37

    13. XM_066310461.1 → XP_066166558.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

    14. XM_066310460.1 → XP_066166557.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

    15. XM_066310462.1 → XP_066166559.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

    16. XM_066310468.1 → XP_066166565.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

      UniProtKB/TrEMBL
      A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

    17. XM_066310463.1 → XP_066166560.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

      UniProtKB/TrEMBL
      A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

    18. XM_066310467.1 → XP_066166564.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

      UniProtKB/TrEMBL
      A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

    19. XM_066310464.1 → XP_066166561.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

      UniProtKB/TrEMBL
      A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

    20. XM_066310466.1 → XP_066166563.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

      UniProtKB/TrEMBL
      A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

    21. XM_066310465.1 → XP_066166562.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

      UniProtKB/TrEMBL
      A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

    22. XM_066310456.1 → XP_066166553.1  uncharacterized protein LOC4338323 isoform X1

    23. XM_066310459.1 → XP_066166556.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

    24. XM_066310457.1 → XP_066166554.1  phosphatidate cytidylyltransferase, mitochondrial isoform X2

    Nucleotide Protein
    Heading Accession and Version

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