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    LOC4347014 probable ubiquitin receptor RAD23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347014, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347014
    Gene description
    probable ubiquitin receptor RAD23
    Locus tag
    OSNPB_090407200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RAD23; osRAD23; OsJ_29306; P0465E03.1; OJ1261_A08.46; OJ1261_A08.49
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    Genomic context

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    See LOC4347014 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18740640..18744596)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14362998..14366949)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936372 Neighboring gene uncharacterized LOC112936409 Neighboring gene uncharacterized LOC4347015 Neighboring gene DNA mismatch repair protein MSH6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and expression of a rice RAD23 gene. Schultz TF, et al. Plant Mol Biol, 1997 Jun. PMID 9225866
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ubiquitin receptor RAD23
    Names
    LOC_Os09g24200
    Probable DNA repair protein RAD23
    putative RAD23 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403796.1 → NP_001390725.1  probable ubiquitin receptor RAD23 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CB674664, CB674665, CI163634, CI605409
      UniProtKB/Swiss-Prot
      Q0J1W7, Q40742, Q69MY0
      UniProtKB/TrEMBL
      A2Z142

    2. NM_001403797.1 → NP_001390726.1  probable ubiquitin receptor RAD23 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB674664, CB674665, CF319557, CI163634, CI605409

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18740640..18744596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q40742.2 GenPept UniProtKB/Swiss-Prot:Q40742

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