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    LOC4352588 protein rough sheath 2 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352588, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352588
    Gene description
    protein rough sheath 2 homolog
    Locus tag
    OSNPB_120572000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RS2; OsRS2; OsPHAN
    Expression
    Biased expression in flowers (RPKM 30.1), flower buds (RPKM 14.2) and 1 other tissue See more
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    Genomic context

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    See LOC4352588 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24245076..24250699, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23554928..23560601, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352586 Neighboring gene cleavage stimulation factor subunit 77 Neighboring gene serine/arginine-rich SC35-like splicing factor SCL30 Neighboring gene factor of DNA methylation 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein rough sheath 2 homolog
    Names
    LOC_Os12g38400
    Protein PHANTASTICA homolog
    transcription factor OsRS2
    transcription factor rough sheath 2 like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423592.1 → NP_001410521.1  protein rough sheath 2 homolog

      Status: VALIDATED

      Source sequence(s)
      AB064519, CI239700, CI589775
      UniProtKB/Swiss-Prot
      Q948M5, Q94IB1
      UniProtKB/TrEMBL
      A0A7M3VDX2, F4MGP4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      24245076..24250699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94IB1.1 GenPept UniProtKB/Swiss-Prot:Q94IB1

    Gene LinkOut

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