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    LOC4341732 protein trichome birefringence-like 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341732, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341732
    Gene description
    protein trichome birefringence-like 5
    Locus tag
    OSNPB_060659400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 4.6) and flower buds (RPKM 2.8) See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28013064..28015157)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27148675..27150768)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene nuclear intron maturase 3, mitochondrial Neighboring gene villin-3-like Neighboring gene glutaredoxin-C8-like Neighboring gene uncharacterized LOC107275395

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trichome birefringence-like 5
    Names
    B1047G05.34
    OSJNBa0051O02.6
    Os06g0659400
    lustrin A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28013064..28015157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787167.3 → XP_015642653.1  protein trichome birefringence-like 5 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WZG6, A2YFU3, A3BE94, Q67U25
      Conserved Domains (2) summary
      pfam13839
      Location:167 → 450
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:112 → 165
      PMR5N; PMR5 N terminal Domain

    2. XM_015787168.3 → XP_015642654.1  protein trichome birefringence-like 5 isoform X2

      UniProtKB/TrEMBL
      A2YFU3
      Conserved Domains (2) summary
      pfam13839
      Location:167 → 451
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:113 → 165
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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