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    LOC4333505 flowering locus K homology domain [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333505, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333505
    Gene description
    flowering locus K homology domain
    Locus tag
    OSNPB_030627500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333505 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (24786812..24795314)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (23925578..23934168)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic Neighboring gene iron-sulfur protein required for NADH dehydrogenase, mitochondrial Neighboring gene uncharacterized LOC136355878 Neighboring gene calmodulin calcium-dependent NAD kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    flowering locus K homology domain
    Names
    Os03g0627500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      24786812..24795314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777033.2 → XP_015632519.1  flowering locus K homology domain

      UniProtKB/TrEMBL
      A0A5S6RAN4, A0A8J8XSD5, B9F9T9, Q0DQ67, Q10GH8, Q8W5C2
      Conserved Domains (2) summary
      cd02396
      Location:203 → 267
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:386 → 447
      KH_1; KH domain
    Nucleotide Protein
    Heading Accession and Version

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