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    LOC4347865 uncharacterized LOC4347865 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347865, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4347865
    Gene description
    uncharacterized LOC4347865
    Locus tag
    OSNPB_090563800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347865 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26850182..26859121, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22405455..22414411, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene putative F-box protein At2g02030 Neighboring gene uncharacterized LOC4347864 Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene thiol protease SEN102 Neighboring gene uncharacterized LOC9271338

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables preribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347865
    Names
    OSJNBa0042B15.6
    Os09g0563800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26850182..26859121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755796.2 → XP_015611282.1  uncharacterized protein LOC4347865 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XR97, Q650Y8
      Conserved Domains (1) summary
      cl38936
      Location:114 → 242
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_015755795.3 → XP_015611281.1  uncharacterized protein LOC4347865 isoform X1

      Conserved Domains (1) summary
      cl38936
      Location:119 → 247
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_015755797.3 → XP_015611283.1  uncharacterized protein LOC4347865 isoform X3

      Conserved Domains (1) summary
      cl21455
      Location:109 → 237
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RNA

    1. XR_010734849.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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