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    LOC4339971 BAG family molecular chaperone regulator 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339971, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339971
    Gene description
    BAG family molecular chaperone regulator 3
    Locus tag
    OSNPB_060126500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339971 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1571130..1573209)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1414212..1416300)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At2g21480 Neighboring gene uncharacterized LOC4339970 Neighboring gene peroxisomal membrane protein 11-5-like Neighboring gene dehydration-responsive element-binding protein 1C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-folding chaperone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BAG family molecular chaperone regulator 3
    Names
    BAG domain containing protein-like
    OSJNBa0038F22.7
    Os06g0126500
    P0425F02.41

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1571130..1573209
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785648.3 → XP_015641134.1  BAG family molecular chaperone regulator 3

      UniProtKB/TrEMBL
      A0A0P0WSG8, B8B1X8, B9FR98, Q0DF00
      Conserved Domains (2) summary
      pfam02179
      Location:180 → 248
      BAG; BAG domain
      cl28922
      Location:77 → 146
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version

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