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    LOC4338615 protein CHROMOSOME TRANSMISSION FIDELITY 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338615, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4338615
    Gene description
    protein CHROMOSOME TRANSMISSION FIDELITY 7
    Locus tag
    OSNPB_050376300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338615 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18261902..18269632, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18161323..18169097, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein 1-like Neighboring gene cell division control protein 48 homolog B-like Neighboring gene probable folate-biopterin transporter 2 Neighboring gene uncharacterized LOC4338617 Neighboring gene protein GAST1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptide-lysine-N-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CHROMOSOME TRANSMISSION FIDELITY 7
    Names
    Os05g0376300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18261902..18269632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783923.3 → XP_015639409.3  protein CHROMOSOME TRANSMISSION FIDELITY 7

      UniProtKB/TrEMBL
      A0A0P0WLL6, A0A8J8Y9W7, B8AXP9, B9FPA3, Q0DIM8

    2. XM_015783922.2 → XP_015639408.1  protein CHROMOSOME TRANSMISSION FIDELITY 7

      UniProtKB/TrEMBL
      A0A0P0WLL6, A0A8J8Y9W7, B8AXP9, B9FPA3, Q0DIM8
      Conserved Domains (2) summary
      pfam13878
      Location:61 → 100
      zf-C2H2_3; zinc-finger of acetyl-transferase ESCO
      pfam13880
      Location:253 → 321
      Acetyltransf_13; ESCO1/2 acetyl-transferase
    Nucleotide Protein
    Heading Accession and Version

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