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    LOC4335977 glutamate decarboxylase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335977, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335977
    Gene description
    glutamate decarboxylase 4
    Locus tag
    OSNPB_040447800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GAD
    Expression
    Biased expression in flower buds (RPKM 19.9), flowers (RPKM 11.3) and 3 other tissues See more
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    Genomic context

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    See LOC4335977 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22822927..22825359)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22330172..22332546)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene D-galacturonate reductase Neighboring gene non-functional NADPH-dependent codeinone reductase 2-like Neighboring gene uncharacterized LOC107278255 Neighboring gene uncharacterized LOC9269545 Neighboring gene uncharacterized LOC4335978

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus. Akama K, et al. Biochim Biophys Acta, 2001 Dec 30. PMID 11779628
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutamate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate decarboxylase 4
    Names
    Os04g0447800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22822927..22825359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778429.3 → XP_015633915.1  glutamate decarboxylase 4

      UniProtKB/TrEMBL
      B8AUD4, Q01J81, Q0JCV4, Q7XV18, Q9AR41
      Conserved Domains (1) summary
      TIGR01788
      Location:19 → 447
      Glu-decarb-GAD; glutamate decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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