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    LOC4341004 uncharacterized LOC4341004 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341004, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341004
    Gene description
    uncharacterized LOC4341004
    Locus tag
    OSNPB_060364500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341004 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (15374828..15383213)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (15188970..15199137)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281273 Neighboring gene uncharacterized LOC107281364 Neighboring gene uncharacterized LOC107281342 Neighboring gene uncharacterized LOC107281377

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341004
    Names
    OSJNBa0034G14.6
    Os06g0364500
    P0543C04.42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      15374828..15383213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786177.3 → XP_015641663.1  uncharacterized protein LOC4341004 isoform X4

      UniProtKB/TrEMBL
      Q69KT1, Q69TC7
      Conserved Domains (2) summary
      pfam13947
      Location:28 → 89
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      pfam14380
      Location:228 → 262
      WAK_assoc; Wall-associated receptor kinase C-terminal

    2. XM_026026606.2 → XP_025882391.1  uncharacterized protein LOC4341004 isoform X1

      Conserved Domains (2) summary
      pfam13947
      Location:28 → 129
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      pfam14380
      Location:228 → 262
      WAK_assoc; Wall-associated receptor kinase C-terminal

    3. XM_026026607.2 → XP_025882392.1  uncharacterized protein LOC4341004 isoform X2

      Conserved Domains (2) summary
      pfam13947
      Location:28 → 129
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      pfam14380
      Location:228 → 262
      WAK_assoc; Wall-associated receptor kinase C-terminal

    4. XM_015786178.3 → XP_015641664.1  uncharacterized protein LOC4341004 isoform X3

      Conserved Domains (2) summary
      pfam13947
      Location:28 → 89
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      pfam14380
      Location:228 → 262
      WAK_assoc; Wall-associated receptor kinase C-terminal
    Nucleotide Protein
    Heading Accession and Version

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