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    LOC4342213 two pore potassium channel b-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342213, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342213
    Gene description
    two pore potassium channel b-like
    Locus tag
    OSNPB_070108800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    KCO2; TPKB; OsKCO2; OsJ_22819; OJ1567_G09.108
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    Genomic context

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    See LOC4342213 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (477182..478650)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (467235..468741)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein C2-DOMAIN ABA-RELATED 4 Neighboring gene senescence-specific cysteine protease SAG39 Neighboring gene MADS-box transcription factor 15-like Neighboring gene uncharacterized LOC107281556

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of the potassium channel TPKb in small vacuoles confers osmotic and drought tolerance to rice. Ahmad I, et al. New Phytol, 2016 Feb. PMID 26474307
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TPKb can alter the potassium status of small vacuoles.
      Title: Overexpression of the potassium channel TPKb in small vacuoles confers osmotic and drought tolerance to rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables outward rectifier potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables potassium ion leak channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in stabilization of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two pore potassium channel b
    Names
    Calcium-activated outward-rectifying potassium channel 2
    LOC_Os07g01810
    P0585H11.123
    Two K(+) channel b
    putative outward-rectifying potassium channel KCO1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421959.1 → NP_001408888.1  two pore potassium channel b

      Status: VALIDATED

      Source sequence(s)
      AK109604, CI136436
      UniProtKB/Swiss-Prot
      A0A0P0X1G6, Q8LIN5
      UniProtKB/TrEMBL
      A2YHF0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      477182..478650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LIN5.1 GenPept UniProtKB/Swiss-Prot:Q8LIN5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials