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    LOC4330919 subtilisin-like protease SBT1.4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330919, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330919
    Gene description
    subtilisin-like protease SBT1.4
    Locus tag
    OSNPB_020780200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1293_A01.34
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    Genomic context

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    See LOC4330919 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33540911..33543527, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33045388..33047997, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT1.4 Neighboring gene probable carboxylesterase 12 Neighboring gene protein SEMI-ROLLED LEAF 2-like Neighboring gene dof zinc finger protein 2-like Neighboring gene polyadenylate-binding protein-interacting protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT1.4
    Names
    Os02g0780200
    putative subtilisin-like proteinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33540911..33543527 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768730.2 → XP_015624216.1  subtilisin-like protease SBT1.4

      UniProtKB/TrEMBL
      A2XA93, Q0DX21, Q6K7F4
      Conserved Domains (4) summary
      cd04852
      Location:137 → 608
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:381 → 502
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:51 → 139
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:689 → 787
      fn3_6; Fibronectin type-III domain
    Nucleotide Protein
    Heading Accession and Version

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