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    LOC4326831 mitochondrial thiamine diphosphate carrier 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326831, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326831
    Gene description
    mitochondrial thiamine diphosphate carrier 2
    Locus tag
    OSNPB_010934200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0492G09.2
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    Genomic context

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    See LOC4326831 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41622547..41627708)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40978318..40983586)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 18a Neighboring gene protein SRC2 Neighboring gene homeobox protein LUMINIDEPENDENS Neighboring gene psbP domain-containing protein 7, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables thiamine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in thiamine pyrophosphate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial thiamine diphosphate carrier 2
    Names
    Os01g0934200
    P0423A12.32
    mitochondrial thiamine pyrophosphate carrier
    putative mitochondrial deoxynucleotide carrier

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41622547..41627708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766750.3 → XP_015622236.2  mitochondrial thiamine diphosphate carrier 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VCK7, B8A8T3, Q5JMQ9, Q5JMY9

    2. XM_066306757.1 → XP_066162854.1  mitochondrial thiamine diphosphate carrier 2 isoform X2

    RNA

    1. XR_001542671.3 RNA Sequence

    2. XR_010738783.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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